PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP039833.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family LBD
Protein Properties Length: 224aa    MW: 24783.1 Da    PI: 8.9464
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP039833.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260135.52e-42431421100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk+lrr+Ca++C+++pyf  ++++kfa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++gvi++lqqq+++l+ael++++
  PCP039833.1  43 PCAACKLLRRRCAQECPFSPYFSPHESQKFASVHKVFGASNVSKMLMEVPETQRADAANSLVYEANVRLRDPVYGCMGVISALQQQVQSLQAELNAVR 140
                  7**********************************************************************************************998 PP

       DUF260  99 ee 100
                   e
  PCP039833.1 141 GE 142
                  76 PP
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    
MSRERERFDE VSKKFKRETD ASHYQMGRRH MLGPPGTLNT ITPCAACKLL RRRCAQECPF  60
SPYFSPHESQ KFASVHKVFG ASNVSKMLME VPETQRADAA NSLVYEANVR LRDPVYGCMG  120
VISALQQQVQ SLQAELNAVR GEILKYKYRE ANLLPSNSHH HMALFSTSGA VSVASLPQTP  180
QPLLPLSPPP PLPPTSSSSS MYTNQQTSAA DYSSLSSENV SFFG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.13e-87LBD family protein