PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP039900.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 212aa    MW: 23062.4 Da    PI: 6.2972
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP039900.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.1e-053759123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ C + F++   L  H+++H
  PCP039900.1 37 YTCKFCRREFRSAQALGGHMNVH 59
                 9********************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    
MWNPKPVQEP EDDSWEVRAF AEDTGNVMGT TWPPRSYTCK FCRREFRSAQ ALGGHMNVHR  60
RDRARLHQSL PQMNPAAISS ASTSSFIIPT QELVNRNGGS CLVYQLPSPS SINDASFNTA  120
TTLMSSSSTN GHGVESSPST LLSVSPNIPP HDYLVSVVPP AGRSNSNSQY CHSNKSSAHD  180
DPEPLTSGTE NGNFEELDLE LRLGHGRPAI PS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.18e-37C2H2 family protein