PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP039918.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 215aa    MW: 24436 Da    PI: 10.0767
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP039918.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.92e-211762449
                 -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                  n+sn qvtfskRr g++KKA+EL++LC+aev +i+fs+  +++ +
  PCP039918.1 17 ANESNLQVTFSKRRSGLFKKASELCTLCGAEVGIIVFSPGRRVFSF 62
                 699***********************************99888776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    
MAKKSKGRQK VEMVKMANES NLQVTFSKRR SGLFKKASEL CTLCGAEVGI IVFSPGRRVF  60
SFGHPSVEAV MDRFLSHDPF NPHLHPPSGT MQLIEAHRNA TVHELNTELT QVMNQLEAEK  120
KRRDQLNQMT RVSQAQCWWE APVDEMQMPQ LDQLKSSLVD LKMNVTKQAD RVLIQNTLNP  180
NSQFFVGSSS QQPVMPPHNL PHPNAWNHPG HGRFF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-75M-type_MADS family protein