PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP040057.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family MYB
Protein Properties Length: 110aa    MW: 12578.6 Da    PI: 10.9424
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP040057.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.21.9e-131663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+ Ed ll+++++ +G g+ ++ ++  g+ R++k+ck+rw +yl
      PCP040057.1 16 RGSWTAREDNLLIQYINSHGEGRRSSLPKNDGLLRCGKSCKLRWMNYL 63
                     89******************************99************97 PP
2Myb_DNA-binding25.23.7e-08771101045
                      HHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  10 ellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      el++ ++++lG++ W++I  + + gR ++++k++w+
      PCP040057.1  77 ELILGLHALLGNR-WSLITGRPP-GRIDNEIKNYWN 110
                      677889*******.*********.***********7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    
MLNMGRAPCS KVGLHRGSWT AREDNLLIQY INSHGEGRRS SLPKNDGLLR CGKSCKLRWM  60
NYLRPDIKRG NITPVKELIL GLHALLGNRW SLITGRPPGR IDNEIKNYWN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.11e-47MYB family protein