PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP041037.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 342aa MW: 38661.8 Da PI: 8.6707

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP041037.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.6	4e-15	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd l+ + + +G+g +W + +++ g++R++k+c++rw++yl PCP041037.1 14 RGPWSPEEDAALKSYLESHGTGgNWILLPKKAGLRRCGKSCRLRWLNYL 62 89*********************************************97 PP
2	Myb_DNA-binding	24	8.8e-08	69	117	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 g++T+eEd ++ + +q+G+++ ++ +R++k+c++rw++yl PCP041037.1 69 GSFTEEEDSIIFSLYNQMGSRQVNKXXXXXXxxXRRCGKSCRLRWLNYL 117 78*****************8888666666999***********97 PP
3	Myb_DNA-binding	47.2	5.1e-15	124	173	2	46
SSS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwqk 46 g++T+eEd ++ + +q+G++ W+ Ia++m+ gRt++++k++w++ PCP041037.1 124 GSFTEEEDSIIFSLYNQMGSRqvnkfkXWSVIASHMP-GRTDNDVKNYWNT 173 79*********************************.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence
MGRTPCCDKD NVKRGPWSPE EDAALKSYLE SHGTGGNWIL LPKKAGLRRC GKSCRLRWLN 60 YLRPDIKHGS FTEEEDSIIF SLYNQMGSRQ VNKXXXXXXX XXRRCGKSCR LRWLNYLRPD 120 IKHGSFTEEE DSIIFSLYNQ MGSRQVNKFK XWSVIASHMP GRTDNDVKNY WNTKLKKKLL 180 VLGGKVKNIS SEEREPTITN NANFSGIPKT EEPQDPAFST FQPATLQTLS DVNSGLNAYN 240 QTLRLNPDQL YSPKPLGFSN FGASSRRNFS TTVSLSQEGS SVSDSSSIAG NGYLDQDSWF 300 CMDYGYGMAY DNNVNYYGMC FEKKTSEAVP SGYTDLGELF SS

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence

MGRTPCCDKD NVKRGPWSPE EDAALKSYLE SHGTGGNWIL LPKKAGLRRC GKSCRLRWLN  60
YLRPDIKHGS FTEEEDSIIF SLYNQMGSRQ VNKXXXXXXX XXRRCGKSCR LRWLNYLRPD  120
IKHGSFTEEE DSIIFSLYNQ MGSRQVNKFK XWSVIASHMP GRTDNDVKNY WNTKLKKKLL  180
VLGGKVKNIS SEEREPTITN NANFSGIPKT EEPQDPAFST FQPATLQTLS DVNSGLNAYN  240
QTLRLNPDQL YSPKPLGFSN FGASSRRNFS TTVSLSQEGS SVSDSSSIAG NGYLDQDSWF  300
CMDYGYGMAY DNNVNYYGMC FEKKTSEAVP SGYTDLGELF SS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36890.1	2e-49	MYB family protein