PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP041463.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB_related

Protein Properties

Length: 598aa MW: 63285.7 Da PI: 8.5629

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP041463.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.6	3.9e-10	206	252	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqky 47 ++W++ Ed+ l+ av+++G g+W+ I r Rt+ q+ rw k PCP041463.1 206 KKWSEAEDLELIAAVQKHGEGNWANILRGDFkGDRTPSQLNQRWKKI 252 69**********************98422359********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 598 aa Download sequence
MLEKAKDPKK GFITEEDTAT LLQRYAPTTV LALVQEVANY PDGKMDWNRL VANTSTGISN 60 AREYQMLWRH LAYREALLDK LDNGAQPLDD DSDLEYEVES FPAVSAQAST EAAACVKVLI 120 LSGLSSDVSH QNGLTVEGPL SMNLPNGQAS RSHQNSQATC SMRGKNITVP VSVLKNPLPV 180 VTASTVVTAE GDDALGNVMA PRKRSKKWSE AEDLELIAAV QKHGEGNWAN ILRGDFKGDR 240 TPSQLNQRWK KIRKNVGGGS SGKLSEAQAA ARHSLSIALN MPNITANTIG TAGTSTHSKL 300 AGTNATSNSV HCTTAEAKPQ SQQGLNPVKT YQTGLSGSTT KAPVIAKKTI PKLTDSMVRA 360 AAVAAGARIA FPSDAASLLK AAQAKNAVRI MPTSGSSTQS VKPGSMSTHS ELPPNVHIMR 420 SSSAAIPPSI PSSTAATPGT TRPRPSKVLP QASQHTPTSD AMLSRQTNGV SCNLDAEPGS 480 APTDQVQDGA VISRDGPNDR VQKDKSPDQK AQSKNLSTNA ENPVDSLKIE RDETDSKAVT 540 GVKAEERKSA KDNEIPCSSV NVGGSDPSAV DSCETEAQVR STQIFSPLQQ MDARENRS

Sequence ? help Back to Top

Protein Sequence Length: 598 aa Download sequence

MLEKAKDPKK GFITEEDTAT LLQRYAPTTV LALVQEVANY PDGKMDWNRL VANTSTGISN  60
AREYQMLWRH LAYREALLDK LDNGAQPLDD DSDLEYEVES FPAVSAQAST EAAACVKVLI  120
LSGLSSDVSH QNGLTVEGPL SMNLPNGQAS RSHQNSQATC SMRGKNITVP VSVLKNPLPV  180
VTASTVVTAE GDDALGNVMA PRKRSKKWSE AEDLELIAAV QKHGEGNWAN ILRGDFKGDR  240
TPSQLNQRWK KIRKNVGGGS SGKLSEAQAA ARHSLSIALN MPNITANTIG TAGTSTHSKL  300
AGTNATSNSV HCTTAEAKPQ SQQGLNPVKT YQTGLSGSTT KAPVIAKKTI PKLTDSMVRA  360
AAVAAGARIA FPSDAASLLK AAQAKNAVRI MPTSGSSTQS VKPGSMSTHS ELPPNVHIMR  420
SSSAAIPPSI PSSTAATPGT TRPRPSKVLP QASQHTPTSD AMLSRQTNGV SCNLDAEPGS  480
APTDQVQDGA VISRDGPNDR VQKDKSPDQK AQSKNLSTNA ENPVDSLKIE RDETDSKAVT  540
GVKAEERKSA KDNEIPCSSV NVGGSDPSAV DSCETEAQVR STQIFSPLQQ MDARENRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58220.1	1e-68	MYB_related family protein