PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP041767.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 240aa MW: 27634.9 Da PI: 5.2165

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP041767.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.6	3.7e-10	14	60	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W +eEde+l+ +v++ Gg++W++ ++ g++R++ +c r ++y PCP041767.1 14 KGPWLEEEDERLKTYVNLKGGRRWDALVKESGLRRSGRSCSMRSLNY 60 79**************************************7776666 PP
2	Myb_DNA-binding	41.3	3.6e-13	74	112	8	48
HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 E++ ++++++++G++ W+ I++ ++ gRt++++k++w+++l PCP041767.1 74 EEKTILQLHQRWGNK-WSMISQALP-GRTDNEIKNYWRTHL 112 99***********.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence
MTCLAAVEGE NLLKGPWLEE EDERLKTYVN LKGGRRWDAL VKESGLRRSG RSCSMRSLNY 60 LCPNIKHGKI TIIEEKTILQ LHQRWGNKWS MISQALPGRT DNEIKNYWRT HLKKKIEIQD 120 GNFQCTLNKN QQGIFCQEGD MNEEKYDFDQ NHVSVKNLFE TKVTSSDDLG LSDFAATNSP 180 YETQLSEWIS ELSSEQSGTT YNQDCNSVES DLCHLKWTPD DSDAWDSPAS EVLAYLLRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53200.1	5e-53	MYB family protein