PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP042252.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

SBP

Protein Properties

Length: 430aa MW: 47701.5 Da PI: 6.8415

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP042252.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	87.8	1.2e-27	189	251	5	67
TT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT CS SBP 5 egCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLa 67 e+ ++dls+a+ y+rrh++Ce hskap v+vsgl++rfC +Csrfh+lsefD++k+sCrr+L PCP042252.1 189 ESVTVDLSDARAYNRRHRMCELHSKAPLVIVSGLKRRFCHKCSRFHDLSEFDDTKQSCRRHLP 251 67899*******************************************************984 PP

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence
MKIEEIGIIQ HDQTESRRRL VELPSGDRGE SSGSGAETTP HEQNGENGGQ QMALSGGGVG 60 AAALGAALAR DARDSLVSVS NIEAVINQIG GSGVVKLQNE QNEAKGSGEV PAAMAKSAVG 120 LNALSMEGTR DVTETLDPEV NIKVGWKQEV YELDAPFREL KEDFLKDEKD EELDEQVEDH 180 HDRKKKGAES VTVDLSDARA YNRRHRMCEL HSKAPLVIVS GLKRRFCHKC SRFHDLSEFD 240 DTKQSCRRHL PYIEHHGTGT RLKDVSGDID TFPLDNPVKS TQTYMKKLVF KASLNEYQKR 300 KALKAISGVE GLDSISWDSS NQRLTVLLVD EEGLVEAAHR RSIRIRFMVR HQLPPDSSKT 360 ADVKSKLRES GNLDPRLQAK VLKVVDVSYG GKDGVNQAVK LSAEFLSNVK FIQEHNLLGR 420 HFEEVNHGRR

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence

MKIEEIGIIQ HDQTESRRRL VELPSGDRGE SSGSGAETTP HEQNGENGGQ QMALSGGGVG  60
AAALGAALAR DARDSLVSVS NIEAVINQIG GSGVVKLQNE QNEAKGSGEV PAAMAKSAVG  120
LNALSMEGTR DVTETLDPEV NIKVGWKQEV YELDAPFREL KEDFLKDEKD EELDEQVEDH  180
HDRKKKGAES VTVDLSDARA YNRRHRMCEL HSKAPLVIVS GLKRRFCHKC SRFHDLSEFD  240
DTKQSCRRHL PYIEHHGTGT RLKDVSGDID TFPLDNPVKS TQTYMKKLVF KASLNEYQKR  300
KALKAISGVE GLDSISWDSS NQRLTVLLVD EEGLVEAAHR RSIRIRFMVR HQLPPDSSKT  360
ADVKSKLRES GNLDPRLQAK VLKVVDVSYG GKDGVNQAVK LSAEFLSNVK FIQEHNLLGR  420
HFEEVNHGRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33810.1	8e-23	SBP family protein