PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP042574.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

TCP

Protein Properties

Length: 450aa MW: 50258.6 Da PI: 9.3411

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP042574.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	142.3	3.8e-44	161	306	2	130
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssssaseceaesssss 81 gkkdrhski+T++g+RdRR+Rls+++a++fFdLqd+LGfdk+sktieWL++++k+aik+l + + ++s PCP042574.1 161 SGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFTKSKTAIKDLKQHllvspkedysstnggataK------------VNS 246 69************************************************************9988766655444332221............111 PP TCP 82 asnsssg..............kaaksaakskksqksaasalnlak.esrakarararertrekm 130 ++ + +aak + + ++++++ +l++ + esr +arararertrek PCP042574.1 247 SE----SttgdvaskimepnsSAAKGDISVGLAREKKNRKLSVVArESRVEARARARERTREKL 306 11....0111233345555545555555555555555555555555**************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence
MFPSSSTTSN SQLPFLCDDN HTNGIIDDFH QNPNSISSHG GHHQYYSQYY YSDDQQQQQQ 60 APDFLEHDGM LLSYLLSQQQ LLIDNSSTTN VATHSNHIRA HSSAKISIVD SNSNKTMELI 120 NRADQITVIP AADSQIKKNN VKMNGEGGGE KKEKFARKRA SGKKDRHSKI YTAQGPRDRR 180 MRLSLQIARK FFDLQDMLGF DKASKTIEWL FTKSKTAIKD LKQHLLVSPK EDYSSTNGGA 240 TAKVNSSEST TGDVASKIME PNSSAAKGDI SVGLAREKKN RKLSVVARES RVEARARARE 300 RTREKLMRIR GFDQDHQSTK QSHKHQEQQN PNELFETAGM MNSMMMSMNR PNDEASGENS 360 EDCDFPGNWG AINNTKNIIT GNVLQVVQNP TSYPKQQNPS SIFGTGTQEQ NPNSIFLNTL 420 AKAQDQNSTT SSNFEINSNI STLQPLFTGN

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence

MFPSSSTTSN SQLPFLCDDN HTNGIIDDFH QNPNSISSHG GHHQYYSQYY YSDDQQQQQQ  60
APDFLEHDGM LLSYLLSQQQ LLIDNSSTTN VATHSNHIRA HSSAKISIVD SNSNKTMELI  120
NRADQITVIP AADSQIKKNN VKMNGEGGGE KKEKFARKRA SGKKDRHSKI YTAQGPRDRR  180
MRLSLQIARK FFDLQDMLGF DKASKTIEWL FTKSKTAIKD LKQHLLVSPK EDYSSTNGGA  240
TAKVNSSEST TGDVASKIME PNSSAAKGDI SVGLAREKKN RKLSVVARES RVEARARARE  300
RTREKLMRIR GFDQDHQSTK QSHKHQEQQN PNELFETAGM MNSMMMSMNR PNDEASGENS  360
EDCDFPGNWG AINNTKNIIT GNVLQVVQNP TSYPKQQNPS SIFGTGTQEQ NPNSIFLNTL  420
AKAQDQNSTT SSNFEINSNI STLQPLFTGN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	9e-33	TCP family protein