PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP042775.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 178aa MW: 19298.7 Da PI: 9.4873

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP042775.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.8	0.0015	30	52	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H PCP042775.1 30 FECKTCNRQFPSFQALGGHRASH 52 89**********99999998887 PP
2	zf-C2H2	12.4	0.00048	84	106	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F+ L H+r+H PCP042775.1 84 HECNICGLEFPVGQALGGHMRRH 106 79********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence
MANCLMLLSR GINNNANQYD SFSVSPNRVF ECKTCNRQFP SFQALGGHRA SHKKPRLTGS 60 SGEGNSNSSD PSLSQGSPPK PKTHECNICG LEFPVGQALG GHMRRHRAAL SSCNTTSNVH 120 ERYSSSNSLN PQPAQVFQVL KKTNSGRRAM CLDLNLTPLE NDLETLQLGK AAPLVGFL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59820.1	6e-39	C2H2 family protein