PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP042864.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family MYB
Protein Properties Length: 292aa    MW: 33536.7 Da    PI: 6.3607
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP042864.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.67.1e-192269148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll+++++++G g+W++ a++ g++Rt+k+c++rw++yl
      PCP042864.1 22 RGPWTLEEDRLLIQYIERHGEGQWNLLAKRSGLRRTGKSCRLRWLNYL 69
                     89********************************************97 PP
2Myb_DNA-binding53.46e-1775118146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ ++eE++l++d++ ++G++ W++Ia++++ gRt++++k++w++
      PCP042864.1  75 RGNLSPEEQLLILDLHSKMGNR-WSKIAQYLP-GRTDNEIKNYWRT 118
                      7899******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    
MSTNTKTLSS NCSGEDNSEL RRGPWTLEED RLLIQYIERH GEGQWNLLAK RSGLRRTGKS  60
CRLRWLNYLK PDVKRGNLSP EEQLLILDLH SKMGNRWSKI AQYLPGRTDN EIKNYWRTRM  120
HKQARHLNID MKSREFQNMI RCFWMPRLKQ KIGGETLISS AVLNQNPTIS QPLENNTVQH  180
LTATVSQPPQ ILVLEEINMS GTMYNLDVEK QNTEADYCTS SCIFPSEPVD MSKTAQFPEC  240
PPFYCGDNSG NDMESFKLQE SVSADSAPNF PGNSSGDCYV AENNWFDSDF FM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25340.12e-72MYB family protein