PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP042962.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 193aa    MW: 21750 Da    PI: 8.004
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP042962.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.19.5e-131011312151
                  HHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  21 lKKAeELSvLCdaevaviifsstgklyeyss 51 
                  +KKA ELS++C+ e+aviifs+tgkl+++ss
  PCP042962.1 101 FKKAGELSIMCESEAAVIIFSQTGKLFDFSS 131
                  9****************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    
MGLSSTLNAT KLKKKKNLQL FFLDLVPLTS LINEVPILSF TVQAHRTVHD EQIFNYHTIV  60
ENIMHGVGRI GENDEGEDQD QEDRLLAGKA SDLLKDEKRD FKKAGELSIM CESEAAVIIF  120
SQTGKLFDFS SSRLCFSGTT FSTTYLHWHD CVLKLLRTPV ELTSFKATSA LRLAAQKIKF  180
SRAKLKGDCE KLH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.12e-10MIKC_MADS family protein