PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP043117.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family ARR-B
Protein Properties Length: 687aa    MW: 74402.5 Da    PI: 6.0392
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP043117.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.56.1e-28233286155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  kpr++W+ eLH++Fv av+qL G +kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  PCP043117.1 233 KPRVVWSVELHQQFVTAVNQL-GLDKAVPKRILELMNVPGLTRENVASHLQKFRL 286
                  79*******************.********************************8 PP
2Myb_DNA-binding39.81.1e-12235285148
                      TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                      r  W+ e+++++v av+qlG +   +k+I + m+  g+t++++ s++qk++
      PCP043117.1 235 RVVWSVELHQQFVTAVNQLGLDkaVPKRILELMNvPGLTRENVASHLQKFR 285
                      678**********************************************97 PP
3Response_reg72.81.4e-24491571109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+ + +++l+ +l +  y +v+++++++ al+ll+e++  +D++l D+ mp+mdG++ll++   e  +lp+i+++a g  + + + ++ Ga 
   PCP043117.1  49 VLVVDDDTTCLRILELMLLRCLY-QVTTCSEATVALNLLRERKdcFDVVLSDVHMPDMDGFKLLEHVGLEM-DLPVIMMSADGRTSVVMRGIRHGAC 143
                   89*********************.***************99999***********************6644.8************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   dfl Kp++++el +
   PCP043117.1 144 DFLIKPISEAELKN 157
                   ***********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    
MAALQRVAQS SVSTTASSYG SCKAGDGVLS PSAGIEMAVP DQFPVGLRVL VVDDDTTCLR  60
ILELMLLRCL YQVTTCSEAT VALNLLRERK DCFDVVLSDV HMPDMDGFKL LEHVGLEMDL  120
PVIMMSADGR TSVVMRGIRH GACDFLIKPI SEAELKNIWQ HVIRKKWNGS KELEHSGSLE  180
DNDYHKRGNN DFEYTSSVNE GTEVSLKGHK KRINAKEDDD GDTENDDLST SKKPRVVWSV  240
ELHQQFVTAV NQLGLDKAVP KRILELMNVP GLTRENVASH LQKFRLYLKR LSGVAQQQSG  300
IANPFCGPMD SNGKLGSLSR FDFQALAASG QIPPQTLAAL QAELLGQPAG NLVPAMDQPA  360
LLQASLQAPK RPPVEHGVPF MQPFAKSQSN VSKHFPQSVI SAEDASVGFG QWRSNSCSAV  420
APSNDHGGLS TQNSNLLMGI VQQEQRQHKR TQQQPVLTEP SRTFNVQPSC LVVPSQSSTG  480
FQAGNSPASV NQSSSFNRST VIDYSLLSDQ SNNSLNVGHI PTGNLKTSGT LGGYSGPGSI  540
CATSCLVNAV NSTSYQNSTA TLSDSRELPG SLHNTANSQG FYVDKSGEML DQGPLRNLGF  600
VGKETCIPSR FAVDDFESQM SNLNPGRIHV ESSGTLVKQE PSEDYVYNAK LDPVYVPAPD  660
SDAETPLASE TRKIEDKCGG QVHFHSV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-109ARR-B family protein