PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP044147.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB_related

Protein Properties

Length: 590aa MW: 64471.3 Da PI: 9.9891

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP044147.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.4	3.3e-13	352	396	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + ++lG+g+W+ I+r ++Rt+ q+ s+ qky PCP044147.1 352 PWTEEEHRKFLIGLEKLGKGDWRGISRNYVTTRTPTQVASHAQKY 396 8*******************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 590 aa Download sequence
MRALVKIGGK RLSSALSSLS SPYIRRFCSS LISGSVHPSA NVHPNAVLGQ VSTLISSFEL 60 FIGVVQNLSG SGAIVGDDLP GRTVLGCDNV IGHHAVVGVK CQDLKYKAIG NNNLIMGSCH 120 IAHDCKIGNN IIFANNTLLA GHVVVEIVQD VPKYMMVAGE RAVLRGLNLE GLRRNGFTAA 180 EAARGCAEET MEYSKKSQMH NRIIKLQEAL NTEALNIIAW LKMGRKCSHC GNVGHNSRTC 240 TNFRGTPSST SFVGFRLFGV QLHHDHHHIV MSSSNMNSNS ANHHVAMSMK KSFSTDCLPT 300 TSSASSSSPS NSSLSPSRLS MDENICAADK ASIGYLSDGL ICRAQERKKG VPWTEEEHRK 360 FLIGLEKLGK GDWRGISRNY VTTRTPTQVA SHAQKYFLRQ ASLTKKKRRS SLFDMFGSSN 420 NINMATYDPI PTQRDNIIHG DMAIDTSKLP PLQRSTAAKN LKSDHNQKPQ SGRTTTQQLP 480 AWIYGLIDSQ MKSSSSSSEA SVVPDLELTL AAPTSPNLEQ KNRSSPTPAG PLLNLGRIND 540 YLTQAIGGEP PQQHPKMDNS RNYLEKQWRS DLHHKITKIN IPLNRPCTSN

Sequence ? help Back to Top

Protein Sequence Length: 590 aa Download sequence

MRALVKIGGK RLSSALSSLS SPYIRRFCSS LISGSVHPSA NVHPNAVLGQ VSTLISSFEL  60
FIGVVQNLSG SGAIVGDDLP GRTVLGCDNV IGHHAVVGVK CQDLKYKAIG NNNLIMGSCH  120
IAHDCKIGNN IIFANNTLLA GHVVVEIVQD VPKYMMVAGE RAVLRGLNLE GLRRNGFTAA  180
EAARGCAEET MEYSKKSQMH NRIIKLQEAL NTEALNIIAW LKMGRKCSHC GNVGHNSRTC  240
TNFRGTPSST SFVGFRLFGV QLHHDHHHIV MSSSNMNSNS ANHHVAMSMK KSFSTDCLPT  300
TSSASSSSPS NSSLSPSRLS MDENICAADK ASIGYLSDGL ICRAQERKKG VPWTEEEHRK  360
FLIGLEKLGK GDWRGISRNY VTTRTPTQVA SHAQKYFLRQ ASLTKKKRRS SLFDMFGSSN  420
NINMATYDPI PTQRDNIIHG DMAIDTSKLP PLQRSTAAKN LKSDHNQKPQ SGRTTTQQLP  480
AWIYGLIDSQ MKSSSSSSEA SVVPDLELTL AAPTSPNLEQ KNRSSPTPAG PLLNLGRIND  540
YLTQAIGGEP PQQHPKMDNS RNYLEKQWRS DLHHKITKIN IPLNRPCTSN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	405	409	KKKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56840.1	2e-52	MYB_related family protein