PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP044252.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 206aa    MW: 24027.6 Da    PI: 9.1858
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP044252.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF25.31.9e-081052244
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                 +i n+s r+ t+ k r g + K +E+  LC++  + i++s++ 
  PCP044252.1 10 FIINNSSRKATLRKMRRGFMNKMYEINKLCEVPTCAIMYSPDE 52
                 788999**********************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    
MTRRKVKLAF IINNSSRKAT LRKMRRGFMN KMYEINKLCE VPTCAIMYSP DESQPDFWPD  60
SSGVQRLIEQ FRNMPEGEQN KKMVTHEMLL KQRIKKEQEK LNKLKKENRE KQIRMLMNQC  120
LTGKPLTGLD FNDLEDMGSM INETLKDIVA KIKSRKEEEL VEMDQPSVAQ PPMRASVTDE  180
NFHDTIXRVP RSIGDVLTPQ FGDVDD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-36M-type_MADS family protein