PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP044424.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

AP2

Protein Properties

Length: 383aa MW: 43279.8 Da PI: 9.0599

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP044424.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	39	2e-12	68	128	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr..krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+ + ++lg ++ +e Aa+a++ a+ k++g PCP044424.1 68 SRFRGVSRHRWTGRFEAHLWDkLSWNStqkKKgkQAVYLGAYDEEEPAARAYDLAAVKYWG 128 789****************88888888633689*********************998 PP
2	AP2	52.4	1.3e-16	171	222	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g PCP044424.1 171 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 222 89**99******99966...3.6***********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence
MEFMMVRNEE NAGRRRLRTA EPEAQAARCV KRRRRDPPAV GGNSQTEQQL AQKPADQASG 60 ATTVKRSSRF RGVSRHRWTG RFEAHLWDKL SWNSTQKKKG KQAVYLGAYD EEEPAARAYD 120 LAAVKYWGAS TFTNFPISDY DNEIEIMQSM TKEEYLASLR RKSSGFSRGV SKYRGVARHH 180 HNGRWEARIG RVFGNKYLYL GTYSTQEEAA RAYDIAAIEY RGINAVTNFD LSSYIRWLKP 240 RTDDTISTEQ VPEAVTEPKN TPFAASSYIT TEQAPFSFKN PFASDYLHSP RKQEVIRSSK 300 SSSPTALGLL LQSSVFRELV QKNSSFSDDD NSDSEEPKNQ LQAGSNDEFG EIIYDGVGGS 360 PFVCSSNTDE NFTWNSFTST IFA

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence

MEFMMVRNEE NAGRRRLRTA EPEAQAARCV KRRRRDPPAV GGNSQTEQQL AQKPADQASG  60
ATTVKRSSRF RGVSRHRWTG RFEAHLWDKL SWNSTQKKKG KQAVYLGAYD EEEPAARAYD  120
LAAVKYWGAS TFTNFPISDY DNEIEIMQSM TKEEYLASLR RKSSGFSRGV SKYRGVARHH  180
HNGRWEARIG RVFGNKYLYL GTYSTQEEAA RAYDIAAIEY RGINAVTNFD LSSYIRWLKP  240
RTDDTISTEQ VPEAVTEPKN TPFAASSYIT TEQAPFSFKN PFASDYLHSP RKQEVIRSSK  300
SSSPTALGLL LQSSVFRELV QKNSSFSDDD NSDSEEPKNQ LQAGSNDEFG EIIYDGVGGS  360
PFVCSSNTDE NFTWNSFTST IFA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	14	35	RRRLRTAEPEAQAARCVKRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	3e-91	AP2 family protein