PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP044604.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

M-type_MADS

Protein Properties

Length: 644aa MW: 74051.8 Da PI: 8.3399

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP044604.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	61.2	1.2e-19	11	63	3	50
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS.....EEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg.....klyeys 50 i n++ r++tf kR +gilKKA E+S+LCd +v++ii+++++ +l++++ PCP044604.1 11 ITNERARKTTFQKRTKGILKKAGEISTLCDLDVCMIIYGPKQsgrspELHTWP 63 89*************************************98744444577776 PP

Sequence ? help Back to Top
Protein Sequence Length: 644 aa Download sequence
MGRGRLNMEL ITNERARKTT FQKRTKGILK KAGEISTLCD LDVCMIIYGP KQSGRSPELH 60 TWPRNPSEVN RIINKYKAST TCKPAKKTFN LSDLLMDRKT KVHVDTYRAR KEMYEAKYPT 120 WDERIENFSE NELELLLNAL DAKLEAGKRT LLHKRNRPAE HHCSWNRSNM DMVETLQPFP 180 VSSFDHHHQQ QHPSDQMLRF DNSNEYANSV LAPNNNLGPL AMWMLMESKY NHSSLQLTGG 240 ASGCNSQLPF EGRHHSNFNN PMMIQSTVEN MNMNMNMMRQ EYYSARLMQQ PAVPYLQYPV 300 LPASVSSSHQ VHQVQASHQV VRDDDQYEDI SQFNLGSYWD FTVDFDNLHA VITCMHPRIL 360 GSKVLFLLHI LICRLAAYEL EEDNVKSVGQ YNRVGKRKLL GDEFNWTKKK KKKMVGSTDG 420 VTDKVYSNGL FHHSSDSVEQ KLDELRRLMG KAEGDPLRIV GVGAGAWGSV FVAMLQDSYG 480 HLRDKVLIRI WRRPGRLVDR ATAEHLFEVI NSREDVLRRL IRRCAYLKYV EARLGDRTLF 540 ADELLKDGFC VNMIDTPLCP MKVVTNLQEA VWDADIVVNG LPSTETHVVF EEISRYWKER 600 VTMPVIISLS KGVEAELEPE PRIITPTQII NRASKTDSIL FMDC

Sequence ? help Back to Top

Protein Sequence Length: 644 aa Download sequence

MGRGRLNMEL ITNERARKTT FQKRTKGILK KAGEISTLCD LDVCMIIYGP KQSGRSPELH  60
TWPRNPSEVN RIINKYKAST TCKPAKKTFN LSDLLMDRKT KVHVDTYRAR KEMYEAKYPT  120
WDERIENFSE NELELLLNAL DAKLEAGKRT LLHKRNRPAE HHCSWNRSNM DMVETLQPFP  180
VSSFDHHHQQ QHPSDQMLRF DNSNEYANSV LAPNNNLGPL AMWMLMESKY NHSSLQLTGG  240
ASGCNSQLPF EGRHHSNFNN PMMIQSTVEN MNMNMNMMRQ EYYSARLMQQ PAVPYLQYPV  300
LPASVSSSHQ VHQVQASHQV VRDDDQYEDI SQFNLGSYWD FTVDFDNLHA VITCMHPRIL  360
GSKVLFLLHI LICRLAAYEL EEDNVKSVGQ YNRVGKRKLL GDEFNWTKKK KKKMVGSTDG  420
VTDKVYSNGL FHHSSDSVEQ KLDELRRLMG KAEGDPLRIV GVGAGAWGSV FVAMLQDSYG  480
HLRDKVLIRI WRRPGRLVDR ATAEHLFEVI NSREDVLRRL IRRCAYLKYV EARLGDRTLF  540
ADELLKDGFC VNMIDTPLCP MKVVTNLQEA VWDADIVVNG LPSTETHVVF EEISRYWKER  600
VTMPVIISLS KGVEAELEPE PRIITPTQII NRASKTDSIL FMDC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	396	413	KRKLLGDEFNWTKKKKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	4e-23	M-type_MADS family protein