PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP044688.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

LSD

Protein Properties

Length: 517aa MW: 57747.9 Da PI: 8.8755

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP044688.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	40.1	5.9e-13	365	389	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L YPrGA++V+CalC+t+ PCP044688.1 365 CSGCRSILLYPRGATNVCCALCNTI 389 ***********************97 PP
2	zf-LSD1	41.6	2.1e-13	404	428	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ +rGA+sVRC++C+tV PCP044688.1 404 CGGCRTLLMHTRGATSVRCSCCHTV 428 ************************9 PP
3	zf-LSD1	49.1	9.3e-16	442	466	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP+GApsV+Ca+C++V PCP044688.1 442 CGNCRTTLMYPFGAPSVKCAVCHFV 466 ***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 517 aa Download sequence
MDKYKNLLKV IAVQDLILAN PHDPAVSLDF LSKLSQKLHL NRGAVAFLRK YPHIFHIYHV 60 PMKSQTFCRL TDRAAQISKD EAEAINASLP LVVDRLVQLL SMSTSKMLPL RAIFKVGREL 120 GLPDDFENSV IDKNPHLFQL CDAHEPNTHN LKLVNVTSDK FTAAVENWRV EEYCKEGSSV 180 DRAEIQFSFK HGYPPGMKLR KNFRAKVKEW QRLPYVGPYD EMAEKKRSSK AGMMAVEKRA 240 VSIVHEFLNL TVEKMVEVEK ISHFRKCFGF DLNIRDLFLD HPGMFYLSTK GKRHTVFLRE 300 AYERGCLIHP NPVYNARRKL LDLVILGRHG LFNDDSKPRN HASSKEAELL EQHNEETSMQ 360 SQLVCSGCRS ILLYPRGATN VCCALCNTIT PVPAPGTEMA QLICGGCRTL LMHTRGATSV 420 RCSCCHTVNL APGSSQVAHI NCGNCRTTLM YPFGAPSVKC AVCHFVTNAG MANMRVPIPA 480 HRPNGTANSG MVPSTSASQT VVVENPMSVD ESGKLVS

Sequence ? help Back to Top

Protein Sequence Length: 517 aa Download sequence

MDKYKNLLKV IAVQDLILAN PHDPAVSLDF LSKLSQKLHL NRGAVAFLRK YPHIFHIYHV  60
PMKSQTFCRL TDRAAQISKD EAEAINASLP LVVDRLVQLL SMSTSKMLPL RAIFKVGREL  120
GLPDDFENSV IDKNPHLFQL CDAHEPNTHN LKLVNVTSDK FTAAVENWRV EEYCKEGSSV  180
DRAEIQFSFK HGYPPGMKLR KNFRAKVKEW QRLPYVGPYD EMAEKKRSSK AGMMAVEKRA  240
VSIVHEFLNL TVEKMVEVEK ISHFRKCFGF DLNIRDLFLD HPGMFYLSTK GKRHTVFLRE  300
AYERGCLIHP NPVYNARRKL LDLVILGRHG LFNDDSKPRN HASSKEAELL EQHNEETSMQ  360
SQLVCSGCRS ILLYPRGATN VCCALCNTIT PVPAPGTEMA QLICGGCRTL LMHTRGATSV  420
RCSCCHTVNL APGSSQVAHI NCGNCRTTLM YPFGAPSVKC AVCHFVTNAG MANMRVPIPA  480
HRPNGTANSG MVPSTSASQT VVVENPMSVD ESGKLVS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	1e-66	LSD family protein