PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP044746.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 138aa    MW: 15559.2 Da    PI: 11.2798
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP044746.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.56.5e-2785134251
                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                  ri+n++ rqvtfskRr g+lKKA+EL +LCdaev v+ifsstgkly+++s
  PCP044746.1  85 RIDNSTSRQVTFSKRRSGLLKKAKELAILCDAEVGVMIFSSTGKLYDFAS 134
                  8***********************************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    
MTAPTRKFSE HSHRGHHGHS KTLLGQFCLL NVYSSNVSRH LKKEKIPKNR IPAKAILGET  60
SICLHYLKAL RTRSSMGRGK IVIRRIDNST SRQVTFSKRR SGLLKKAKEL AILCDAEVGV  120
MIFSSTGKLY DFASTRSY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14210.11e-35MIKC_MADS family protein