PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP044772.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MIKC_MADS

Protein Properties

Length: 213aa MW: 24887.8 Da PI: 10.4518

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP044772.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	92.6	1.9e-29	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++ rqvtfskRr+g+lKKA+E+SvLCda+va+i+fs++gkl+eys+ PCP044772.1 9 KRIENTISRQVTFSKRRTGLLKKAHEISVLCDADVALIVFSTKGKLFEYST 59 79***********************************************96 PP
2	K-box	72.3	1.4e-24	78	145	4	71
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKne 71 ++ + ++++ +e+++ e+ kL ++ie +qr++R++ GedLe+Lsl+eLq+LeqqL+++lk+iR++K PCP044772.1 78 RQLNGTNSESQENWSVEYPKLAARIEVIQRKLRNFTGEDLEPLSLRELQNLEQQLDTALKRIRTRKVM 145 56667778889******************************************************965 PP

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence
MGRGKVQLKR IENTISRQVT FSKRRTGLLK KAHEISVLCD ADVALIVFST KGKLFEYSTD 60 SSMERILDRY EQYTFAERQL NGTNSESQEN WSVEYPKLAA RIEVIQRKLR NFTGEDLEPL 120 SLRELQNLEQ QLDTALKRIR TRKVMKLPQL ILNLSCIIYR YATSGQLINK RFLINTNSIY 180 NSGIFRTNSC MNPFQRCTRR YKVIPHASVW TLI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69120.1	7e-72	MIKC_MADS family protein