PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP044787.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family LBD
Protein Properties Length: 178aa    MW: 20045.8 Da    PI: 8.3041
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP044787.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260116.31.9e-3661051100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk++r+kC++dC+lapyfp+++p +f n+ klFG+s++ kl+++lp++ r+ ams+++ eA+ ra+dPv G+++v+++l + +++++ael++++
  PCP044787.1   6 SCAACKHQRKKCPEDCPLAPYFPSNHPTNFHNALKLFGVSRLAKLVTDLPPHLRTPAMSTIFVEADHRAKDPVGGCHAVVRSLLWSINKHQAELDRVR 103
                  6*********************************************************************************************9988 PP

       DUF260  99 ee 100
                   +
  PCP044787.1 104 YQ 105
                  66 PP
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    
MTKSRSCAAC KHQRKKCPED CPLAPYFPSN HPTNFHNALK LFGVSRLAKL VTDLPPHLRT  60
PAMSTIFVEA DHRAKDPVGG CHAVVRSLLW SINKHQAELD RVRYQLELCR RGGNVMPMAQ  120
CLGDFKYNVG AGNVYDQTQF HLVQKNVFQE QEEQGHIGGG VVPQPHEEQS NVFEIRSD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.13e-28LBD family protein