PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP044819.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 213aa    MW: 24864.5 Da    PI: 8.9362
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP044819.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF21.92.2e-071159350
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE.-TTSEEEEEE CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviif.sstgklyeys 50
                 i n+  r+ t  + r+ ++KK  E+ +LCd+    i++  stg+  +++
  PCP044819.1 11 IVNDNARKATSKRSRESLFKKMREITTLCDVGGFTIVYdPSTGEPSTWP 59
                 567777888866669****************876666615688888887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    
MPRSKVKLAW IVNDNARKAT SKRSRESLFK KMREITTLCD VGGFTIVYDP STGEPSTWPE  60
LPLLQQLIAR YQSIPFPERL AKMTDQETYL KEKVAKLKDR INRIQRENFE VEVNDIMHQI  120
TQNGKPFHTF EDRELTNLLL FTEEKMKEIQ KRIKTMEPEV NVPPSDGGEE FNMTVPEHGE  180
DRREYLLKYL EWAKRKLAME NAAGASSSTK QFP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-25M-type_MADS family protein