PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP044872.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

AP2

Protein Properties

Length: 554aa MW: 61182 Da PI: 7.0335

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP044872.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	36.2	1.5e-11	181	235	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+ g + k +g f+ta Aa+a+++a+ k++g PCP044872.1 181 SQYRGVTFYRRTGRWESHIWLM---GffFSaKFDFIGGFDTAHAAARAYDRAAIKFRG 235 78*****************5...6764568889******************997 PP
2	AP2	40.9	5e-13	278	328	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ +Aa+a+++a+ k +g PCP044872.1 278 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEVDAARAYDKAAIKCNG 328 89******.7**5553..2.26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 554 aa Download sequence
MWDLNDSPDQ RPRGEESEGC SSQRTSADGD EEKRKRVGSV SNSSSSAVVI EDGGSDEEED 60 QDDGPTKLAK KQGGGGGKIF GFSVAHEESM DGDPPATVTR QFFPVELDSS SSSNLDVMGP 120 AGGGGSIPPP PSTSSSFPRA HWVGVNFGQS DSGSLGNPPP AGETSHQPMK KSRRGPRSRS 180 SQYRGVTFYR RTGRWESHIW LMGFFFSAKF DFIGGFDTAH AAARAYDRAA IKFRGVEADI 240 NFSIEDYEED LKQMRNLTKE EFVHVLRRQS TGFPRGSSKY RGVTLHKCGR WEARMGQFLG 300 KKYVYLGLFD TEVDAARAYD KAAIKCNGKE AVTNFDPSIY DNELNSSESS GVNAEDHNLD 360 LSLGSTNSKK NNQALGNDHH SQNVAMQHHH SVPMQLDADW RSQGLRPKLN IQRDRSRDEI 420 DAQRRDGYLE SEAMQLLLRT NLQSQAPAEI HKYGQFSRRP TAGDIQMSRN FPPNFNSSNY 480 HHIQFPSSSE GGGRIGSDLS LSTSDHQQQW QSATPTSNLF ATAAASSGFP PQIRPSPTQN 540 SWLQKNGFHS LTRR

Sequence ? help Back to Top

Protein Sequence Length: 554 aa Download sequence

MWDLNDSPDQ RPRGEESEGC SSQRTSADGD EEKRKRVGSV SNSSSSAVVI EDGGSDEEED  60
QDDGPTKLAK KQGGGGGKIF GFSVAHEESM DGDPPATVTR QFFPVELDSS SSSNLDVMGP  120
AGGGGSIPPP PSTSSSFPRA HWVGVNFGQS DSGSLGNPPP AGETSHQPMK KSRRGPRSRS  180
SQYRGVTFYR RTGRWESHIW LMGFFFSAKF DFIGGFDTAH AAARAYDRAA IKFRGVEADI  240
NFSIEDYEED LKQMRNLTKE EFVHVLRRQS TGFPRGSSKY RGVTLHKCGR WEARMGQFLG  300
KKYVYLGLFD TEVDAARAYD KAAIKCNGKE AVTNFDPSIY DNELNSSESS GVNAEDHNLD  360
LSLGSTNSKK NNQALGNDHH SQNVAMQHHH SVPMQLDADW RSQGLRPKLN IQRDRSRDEI  420
DAQRRDGYLE SEAMQLLLRT NLQSQAPAEI HKYGQFSRRP TAGDIQMSRN FPPNFNSSNY  480
HHIQFPSSSE GGGRIGSDLS LSTSDHQQQW QSATPTSNLF ATAAASSGFP PQIRPSPTQN  540
SWLQKNGFHS LTRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	1e-108	AP2 family protein