PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP044900.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 953aa MW: 103789 Da PI: 5.8104

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP044900.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.3	1.8e-10	77	123	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr l+P +K++Ka+ L ++ +k+L PCP044900.1 77 KNHSEAERRRRERINAHLSTLRGLVPCT-----EKMDKATLLAAVISQVKDL 123 58***********************8.....7******9999888777 PP

Sequence ? help Back to Top
Protein Sequence Length: 953 aa Download sequence
MDYYSFSSKS SFGSDFSSLF DPFKHDVSGF GGASRGGAAA NLPHSLVLDS EKGELVKAPA 60 RVGKKEVPEA KALLALKNHS EAERRRRERI NAHLSTLRGL VPCTEKMDKA TLLAAVISQV 120 KDLKMDALES SKGFLIPVDA DEVKIEPYVA AGDGTISVKA SVCCEYRSEL LSDLREALDS 180 LHLKMVKAEI ATLGNRVKNV FVLTSSKPGS NDSDAEAYEL LANSVHQVLS SVLDKASASP 240 EYSPRTTLLS KRRRLSYFDK IDTSSSSSKI MEGGSGKSIL QFAPFQSSVD EGFWHRLSSL 300 KLNKFGIDDS PVPITGFYAP CSHSQVSNHL TLLAESLPSD SSEESSVPGV SRGNRNRCSV 360 PGIIYNTNTV EGFHALDKQG LLKAEAQKIW EDIQSGRALE DSSVLSRFLV ISFADLKKWS 420 FNYWFAFPAL VLDPPATLVN LRPASECFSL EEAESVSAAF NEWRNSSLTA DVPFFLVHID 480 SNSHSTIKHL KDWETSQSAD DGHKLLFGFY DPCHLPNHPG WPLRNLLALI CSRWDLKSVH 540 FLCYRESRGF ADLGLSLVGE ALITVPPGSA AEIGLAISAA DLNLKLMRWR ALPSLNLNSL 600 SSLKCLLLGA GTLGCQVART LMAWGVRNIT LVDNGRVAMS NPLRQSLYTL DDCLNGGEYK 660 VTAAVNSLKK IFPAVEAEGV IMAIPMPGHP IPSQEEQSVL DDCRRLHDLI DSHDVVFLLT 720 DTRESRWLPS LLCANTNKIT ITAALGFDSF LVMRHGAGPC SSSHYSKTEA ENALSAYMGN 780 LGLTDRDGGK RLGCYFCNDV VAPIDSTSNR TLDQQCTVTR PGLAPIASAL AVELLVGILH 840 HPHGIFAEGE VVNSSNSGSS EQPLGILPHQ IRGSLAQFSQ MTLVGHSSDS CTACCSTVVS 900 EYRKRGMEFI LQAINHPTYL EDLTGLTELM KSASKFELDW DDGTDEDDDD LVE

Sequence ? help Back to Top

Protein Sequence Length: 953 aa Download sequence

MDYYSFSSKS SFGSDFSSLF DPFKHDVSGF GGASRGGAAA NLPHSLVLDS EKGELVKAPA  60
RVGKKEVPEA KALLALKNHS EAERRRRERI NAHLSTLRGL VPCTEKMDKA TLLAAVISQV  120
KDLKMDALES SKGFLIPVDA DEVKIEPYVA AGDGTISVKA SVCCEYRSEL LSDLREALDS  180
LHLKMVKAEI ATLGNRVKNV FVLTSSKPGS NDSDAEAYEL LANSVHQVLS SVLDKASASP  240
EYSPRTTLLS KRRRLSYFDK IDTSSSSSKI MEGGSGKSIL QFAPFQSSVD EGFWHRLSSL  300
KLNKFGIDDS PVPITGFYAP CSHSQVSNHL TLLAESLPSD SSEESSVPGV SRGNRNRCSV  360
PGIIYNTNTV EGFHALDKQG LLKAEAQKIW EDIQSGRALE DSSVLSRFLV ISFADLKKWS  420
FNYWFAFPAL VLDPPATLVN LRPASECFSL EEAESVSAAF NEWRNSSLTA DVPFFLVHID  480
SNSHSTIKHL KDWETSQSAD DGHKLLFGFY DPCHLPNHPG WPLRNLLALI CSRWDLKSVH  540
FLCYRESRGF ADLGLSLVGE ALITVPPGSA AEIGLAISAA DLNLKLMRWR ALPSLNLNSL  600
SSLKCLLLGA GTLGCQVART LMAWGVRNIT LVDNGRVAMS NPLRQSLYTL DDCLNGGEYK  660
VTAAVNSLKK IFPAVEAEGV IMAIPMPGHP IPSQEEQSVL DDCRRLHDLI DSHDVVFLLT  720
DTRESRWLPS LLCANTNKIT ITAALGFDSF LVMRHGAGPC SSSHYSKTEA ENALSAYMGN  780
LGLTDRDGGK RLGCYFCNDV VAPIDSTSNR TLDQQCTVTR PGLAPIASAL AVELLVGILH  840
HPHGIFAEGE VVNSSNSGSS EQPLGILPHQ IRGSLAQFSQ MTLVGHSSDS CTACCSTVVS  900
EYRKRGMEFI LQAINHPTYL EDLTGLTELM KSASKFELDW DDGTDEDDDD LVE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	83	88	ERRRRE
2	251	255	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	1e-31	bHLH family protein