PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP044935.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MIKC_MADS

Protein Properties

Length: 245aa MW: 27884.4 Da PI: 9.8755

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP044935.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	98.9	2e-31	25	74	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+ PCP044935.1 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYA 74 79***********************************************8 PP
2	K-box	107.7	1.3e-35	93	188	4	99
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 s++ s++ea ++++qqe+akL+++i nLq+ +R+++G+ L+s +k+L++Le++Lek++++iRskKnell+++ie++qk+e +l+++n+ Lr+k PCP044935.1 93 SNTGSVSEASTQYYQQEAAKLRAQIGNLQNANRNMMGDALSSVPIKDLKSLESKLEKGISRIRSKKNELLFAEIEYMQKRELDLHSNNQLLRAKAT 188 4444599*************************************************************************************9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence
MANENKSLSI DSPQRKLGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA 60 LIVFSNRGRL YEYANNSVKE TVERYKKACA DSSNTGSVSE ASTQYYQQEA AKLRAQIGNL 120 QNANRNMMGD ALSSVPIKDL KSLESKLEKG ISRIRSKKNE LLFAEIEYMQ KRELDLHSNN 180 QLLRAKATEN ERGQQNINVM AGGGPSSYDF LQSQPYDSRN YFQVNALQPN HQYNPRHDQI 240 SLQLV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18960.1	1e-112	MIKC_MADS family protein