PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP044982.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB_related

Protein Properties

Length: 671aa MW: 74951.5 Da PI: 9.7284

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP044982.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.3	7.2e-08	130	171	4	46
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT+eE ++l ++++q+ + + Ia +++ Rt +++k+r++k PCP044982.1 130 WTKEETDQLFELCQQFDLR-FIVIADRFPSSRTVEELKERYYK 171 *****************.********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 671 aa Download sequence
MDAKDILGLS KTSHPASQEK KSRTVKESQR KPDGISREVY ALIGGVPPLM PAVEPLQLKK 60 RPPTDEKITW QWLPFTSSAR KDNLQLFHWV RVVNGVPPMG DYSFAKYNKS VDVVKYTDEE 120 YEKHLTDDMW TKEETDQLFE LCQQFDLRFI VIADRFPSSR TVEELKERYY KVSRSILIAR 180 AAASPGDVSE HPIVKEPYKF TQERDRKRAL SMVLSQTKHQ ERKDSEVLAE AKRIAESRMA 240 ARNAKESELP ITFNVERAIV PGETLSPSSN SEFPSAMVAP STSMAENTST LASLRMLRVY 300 LRTYALDQMI QAASSSAGLR TIKRVEQSLQ ELGVNLKPRV PTKSVCAQHL ELRKEILTLL 360 NLQKQLQYKE AEGSSYRDSP YETPGTPKCV FLCGDQDRTF VPESTSFGGE RVGKRDQKRK 420 APGRAEAPSS PAQPKRPRKS SGILRCHYIE VSNVRIIKVG EDDVVSILHV VKLKDCTHQS 480 LHSRDNKLVS TVVLRYMGHS FASQAMNSSV LACNYAVSGT RMSELVNGKT TCMPSVVSAA 540 QTKVVALRAQ QPSTQNNQGA DGRRAVLLSL AAIAFTAVSS NSAANAGVID DYLEKSKANK 600 ELNDKKRLAT SGANFARAFT VQFGTCKFPE NFTGCQDLAK QKKVPFLSDD LSLECEGKDK 660 YKCGSNVFWK W

Sequence ? help Back to Top

Protein Sequence Length: 671 aa Download sequence

MDAKDILGLS KTSHPASQEK KSRTVKESQR KPDGISREVY ALIGGVPPLM PAVEPLQLKK  60
RPPTDEKITW QWLPFTSSAR KDNLQLFHWV RVVNGVPPMG DYSFAKYNKS VDVVKYTDEE  120
YEKHLTDDMW TKEETDQLFE LCQQFDLRFI VIADRFPSSR TVEELKERYY KVSRSILIAR  180
AAASPGDVSE HPIVKEPYKF TQERDRKRAL SMVLSQTKHQ ERKDSEVLAE AKRIAESRMA  240
ARNAKESELP ITFNVERAIV PGETLSPSSN SEFPSAMVAP STSMAENTST LASLRMLRVY  300
LRTYALDQMI QAASSSAGLR TIKRVEQSLQ ELGVNLKPRV PTKSVCAQHL ELRKEILTLL  360
NLQKQLQYKE AEGSSYRDSP YETPGTPKCV FLCGDQDRTF VPESTSFGGE RVGKRDQKRK  420
APGRAEAPSS PAQPKRPRKS SGILRCHYIE VSNVRIIKVG EDDVVSILHV VKLKDCTHQS  480
LHSRDNKLVS TVVLRYMGHS FASQAMNSSV LACNYAVSGT RMSELVNGKT TCMPSVVSAA  540
QTKVVALRAQ QPSTQNNQGA DGRRAVLLSL AAIAFTAVSS NSAANAGVID DYLEKSKANK  600
ELNDKKRLAT SGANFARAFT VQFGTCKFPE NFTGCQDLAK QKKVPFLSDD LSLECEGKDK  660
YKCGSNVFWK W

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	434	440	PKRPRKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47210.1	0.0	MYB_related family protein