PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP045085.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 240aa    MW: 27592.7 Da    PI: 9.8801
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP045085.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.47.7e-131252444
                 -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
       SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                 +n++ r+ t  kR++g +KK +E+ +LCd+e + +++++++
  PCP045085.1 12 QNHTTRKLTCKKRKKGFMKKMSEITTLCDVESCAVVYGQND 52
                 6999**********************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    
MSRKKVKLAY NQNHTTRKLT CKKRKKGFMK KMSEITTLCD VESCAVVYGQ NDTQPEVWPF  60
PSGVQSTYAK LREMPSMEQT KKQLNMETFL RQRIDKTREQ LRKQKKENRK KEMSILMSQC  120
LTGRSLQDLN MGDLNDLGWV VYHKVKEINK KVKKVNDELA WSGSSQVQVV PTSPPPPSIS  180
GEMMNLQQAQ SQVVPMEMTT PEDQQPQQQL AGLGANTGDD FLPFENQDHH AMWPNTPFFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVKLAYNQNHTTRKLTCKKRK
22226KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-36M-type_MADS family protein