PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP045144.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family LBD
Protein Properties Length: 273aa    MW: 28611.4 Da    PI: 7.5807
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP045144.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601201.3e-3729118189
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                  +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq++ 
  PCP045144.1  29 PCGACKFLRRKCVPGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVCA 118
                  7***********************9989***********************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    
MNPTNPNGGD GSGGGSSSSG GGGTGSGSPC GACKFLRRKC VPGCIFAPYF DSEQGAAHFA  60
AVHKVFGASN VSKLLLHIPV HKRLDAVVTI CYEAQARLRD PVYGCVAHIF ALQQQVCAIF  120
LCKLWYFAGI KEEWSVVNLQ AELSYLQAHL ATMELPSPPP PPPPPSAAAL ITPPQFSISD  180
LPSAVSSMPA SYDLSSLFEP MVMQPWAMQQ RALHDPRHHH QFGGGSSGPS SPAGGGGGDL  240
QSLARELLHR HSSSPSPGSV PCSEGSPSHS HPK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.16e-77LBD family protein