PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT24455.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 128aa    MW: 14747.7 Da    PI: 9.7418
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT24455.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.61.9e-141763349
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                ie+k  r+v fskR+ng+ KKA+E S L++ +v  i+f ++gk + y
  PHT24455.1 17 IESKEARTVAFSKRKNGLGKKAKEYSNLTGEDVGFILFTQDGKPHSY 63
                9*****************************************98888 PP
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    
MDKRGGKGRQ KIEMNLIESK EARTVAFSKR KNGLGKKAKE YSNLTGEDVG FILFTQDGKP  60
HSYGSPSIEK VIDKFHELKQ NDSLQNHTDM RKTNVFEAFE DLRKEVQAFK EKALDSEMPT  120
DKHMLENR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-19M-type_MADS family protein