PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT24756.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 176aa    MW: 20214.9 Da    PI: 8.6712
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT24756.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.35.3e-202069149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyey 49
                k+i+n+  r+vtfskRr g++KKA+EL++L++ae+ +++ s ++++l+++
  PHT24756.1 20 KPIDNQNSRHVTFSKRRLGLFKKASELCILTGAEIVILVQSlKRQRLFTF 69
                78*************************************99567889888 PP
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    
MNVNTSVVKK TQGRKKIAIK PIDNQNSRHV TFSKRRLGLF KKASELCILT GAEIVILVQS  60
LKRQRLFTFG HPSADAVIDR YITGISSSSL SSSTTDEFNL QQNNQYYSHM CKDLEAEKKK  120
KENIEEEKLV NIDDNNNGGY WWNEPIDTKG IDELEEFMVA LENLKKNKDS ELRINF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-27M-type_MADS family protein