PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT24876.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 165aa    MW: 19541.7 Da    PI: 9.9607
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT24876.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF26.77e-09747242
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                ri + ++++v + kR++ + KKA+ L +LCd+++ +  f +
  PHT24876.1  7 RIVDPRKKKVLLDKRLESLYKKAKQLEILCDIKIGMFFFTP 47
                778889999*************************9888876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    
MGVRPSRIVD PRKKKVLLDK RLESLYKKAK QLEILCDIKI GMFFFTPGDQ NIFAWPSLTH  60
ATDRVKNYLD FFDKQRPIKM VKHEDFLQSV LNAKEGKINQ LEKIVEKKEM EYNFNQLVEA  120
RKRFDELEVR EIKALINLFA VKRAQLDERA KQLNENVETK IDSND
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.12e-15M-type_MADS family protein