PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT25599.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 170aa    MW: 19519 Da    PI: 5.3579
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT25599.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF29.21.2e-09250148
                S---SHHHHHHHHHHHHHHHHHHHHHHH.HHHT-EEEEEEE-TTSEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELS.vLCdaevaviifsstgklye 48
                ++ienk+ r vtfskR+ g+ KK + L     d++v +i +s++ k y 
  PHT25599.1  2 EKIENKTTRLVTFSKRKSGLYKKPSKLVeKYEDVDVGIISYSPNVKPYS 50
                57*********************99886246788888888888766655 PP
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    
MEKIENKTTR LVTFSKRKSG LYKKPSKLVE KYEDVDVGII SYSPNVKPYS FFHPTFESVI  60
GRFVSPDTQP SVDGRFFDAN ARIKVTERRG QLDNLDIIEK IISNQTPGAN DLKNLWEYID  120
NVNEEDVKRL EEWLDLVDLK LNHKLIMLEN DAASSTQAPP NNAYQAYSGF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-15M-type_MADS family protein