PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT25628.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 223aa    MW: 25376.1 Da    PI: 9.6087
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT25628.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.21.6e-211663249
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                +ie k   qvtfskRr g++KKA+EL++LC++e+a+i+fs+  k++ +
  PHT25628.1 16 KIEVKNHLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPARKVFSF 63
                58888899**********************************999887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MAKKPSMGRQ KIKIAKIEVK NHLQVTFSKR RSGLFKKASE LCTLCGVEIA IIVFSPARKV  60
FSFGHPNVES LIDRFLLRNN TYNNPITNNS LQLVEAHRNA SICGLNLQLT QILGKVEIEK  120
KRGESLDQMR KNSQSQCWWE APISQLDLQE LEQLKDSVEV LKKYVTNNQA SKFMVNETAN  180
SSTYFGDNGD GIFDNYYIKP PRTMLTSNDL HSHNLGFDLA TFF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.16e-53M-type_MADS family protein