PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT25629.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 138aa    MW: 15857.2 Da    PI: 9.9799
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT25629.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.22.4e-142170149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT.SEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst.gklyey 49
                k+i n+  r+vtfsk r  ++K A+EL++L +ae+ ++i s + ++l+++
  PHT25629.1 21 KPIYNQNSRHVTFSKHRLDLFKRASELCILAGAEIVILIQSLKpQTLFTF 70
                6899***********************************99543677777 PP
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    
MNVNTNTTVK KTQGRRKIAI KPIYNQNSRH VTFSKHRLDL FKRASELCIL AGAEIVILIQ  60
SLKPQTLFTF GHPNADVVID CYLTGKYSSS LSSSSTDKFN LQKNNQYYSQ MCKDLKAEKK  120
KENYEDVKMV NIDNNLYL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-18M-type_MADS family protein