PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT25630.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 160aa    MW: 18113.1 Da    PI: 10.1135
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT25630.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.91.7e-20550449
                -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                + +sn  vtfskRr g++KKA+EL++LC++e+ +i+fs+  k++ +
  PHT25630.1  5 SKESNLLVTFSKRRSGLFKKASELCTLCGVEIVIIVFSPGHKVFSF 50
                6678999********************************9999887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    
MTKMSKESNL LVTFSKRRSG LFKKASELCT LCGVEIVIIV FSPGHKVFSF GHPNVESIIN  60
RFLTRNPTSS SSTTCQLVEA HRNANVRELN AQLTGILNQL EFEKKREVEI EKIKKAKIGK  120
NWWEGPVNEL GLGELEQLKL GMEDLKKNVT KQMQKIILEA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-44M-type_MADS family protein