PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT25916.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 170aa    MW: 19512 Da    PI: 6.5515
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT25916.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF29.87.9e-10250148
                S---SHHHHHHHHHHHHHHHHHHHHHHH.HHHT-EEEEEEE-TTSEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELS.vLCdaevaviifsstgklye 48
                ++ienk+ r vtfskR+ g+ KK + L     d++v +i +s++ k y 
  PHT25916.1  2 EKIENKTTRLVTFSKRKSGLYKKSSKLVeKYEDVDVGIISYSPNVKPYS 50
                57**********************9996246788888888888876665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    
MEKIENKTTR LVTFSKRKSG LYKKSSKLVE KYEDVDVGII SYSPNVKPYS FFHPTFDSVI  60
GRFVSPDTQP SVDGRFFDAN ARIKVTKRRG QLDNLDIIEK IISNQTPGAN DMKNLWEYID  120
NVNEEDVKRL EEWLDLVDLK LNHKLIMLEN DAASSTQAPP NNAYQAYSGF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-15M-type_MADS family protein