PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT25947.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family NF-YB
Protein Properties Length: 217aa    MW: 24363.2 Da    PI: 6.3611
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT25947.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB176.82.1e-5552147297
       NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                 +eqdrflPianv+rimkkv+P+n+kiskdaketvqecvsefisfvt+easdkcqrekrktingdd++wa++ lGfedyv plk+ylkkyrelegek
  PHT25947.1  52 KEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITILGFEDYVTPLKQYLKKYRELEGEK 147
                 89*******************************************************************************************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    
MEDERQGNGQ NVAAIESPES SSNTTIPTSS HITTSTLTII SNNVNNNNSS NKEQDRFLPI  60
ANVGRIMKKV IPGNGKISKD AKETVQECVS EFISFVTGEA SDKCQREKRK TINGDDIIWA  120
ITILGFEDYV TPLKQYLKKY RELEGEKLNV PKQQRLEPHQ QHEQKPTFSY SNAYSPIGLL  180
PQALFIPADQ SFPLSFSPNS IQSQLPKQEH VDSMGHW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G13570.12e-69NF-YB family protein