PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT25952.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 167aa    MW: 18601.7 Da    PI: 10.6193
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT25952.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.11.5e-204794449
                -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE..-TTSEEEEE CS
      SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviif..sstgklyey 49
                +n+sn qvtfskRr+ ++KKA+EL++LC+ae+a+++f  ++ +k+y +
  PHT25952.1 47 KNESNMQVTFSKRRASLFKKASELCTLCGAEIAIVVFfpGKANKVYSF 94
                89**********************************977788888877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    
MRISNIKALG VGIKNHNFLV SQILSSVNLA MPRMSKGRKK VEIVEMKNES NMQVTFSKRR  60
ASLFKKASEL CTLCGAEIAI VVFFPGKANK VYSFGHPSVE LLVDTFLGRD LPPPNDDDHH  120
NHLIRAHQNT GQRGLNKEVM AMQESLQKEK AIGKSLLKSG RGAYDRV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-34M-type_MADS family protein