PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT27208.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 163aa    MW: 19127.8 Da    PI: 10.0576
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT27208.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF29.21.2e-091642228
                ---SHHHHHHHHHHHHHHHHHHHHHHH CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELS 28
                rie + nr+  fskRr g+ KKA+EL 
  PHT27208.1 16 RIEKYANRYSAFSKRRYGLYKKASELV 42
                89***********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    
MERKKTIGRQ KIPLVRIEKY ANRYSAFSKR RYGLYKKASE LVRENDFDLG IFLSSPADKA  60
YAFVHPTQNT IIDRFMNSKI DLGEQIVSKN SRNTVNQLND RLNELDKREE VAKERLFSLS  120
QKNKTREKGR WESIEHLNAD DVMKFQAWLD VGEIMLKDQL AEA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.15e-21M-type_MADS family protein