PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT27623.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 344aa MW: 39790.3 Da PI: 7.0732

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT27623.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.1	3.7e-17	52	97	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l ++v+q+G+ +W++Ia+++ gR++k+c++rw++ PHT27623.1 52 RGHWRPHEDSKLRELVAQYGPQNWNLIAEKLD-GRSGKSCRLRWFNQ 97 899***************************.*********996 PP
2	Myb_DNA-binding	57.5	3.2e-18	104	147	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r+++++eE+e+l+ a+k++G++ W+ Iar ++ gRt++ +k++w+ PHT27623.1 104 RMAFSEEEEERLLTAHKMYGNK-WSMIARLFP-GRTDNAVKNHWHV 147 789*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MNFLVPCVEQ SPWSFNHEEN LQKLKDEIEE ENLVDMKNNN NGGTKTTKLC VRGHWRPHED 60 SKLRELVAQY GPQNWNLIAE KLDGRSGKSC RLRWFNQLDP RINRMAFSEE EEERLLTAHK 120 MYGNKWSMIA RLFPGRTDNA VKNHWHVIMA RKHREQNSVY RRRKSTSSNL QQIIAPNNNN 180 NDSIIQIKSN NMQSDLTISS NNCNNNNIIV DDHQSASTCT DLSLTPSSSK PMFPPFLITR 240 FTHHHHVEHQ GFLDSNKGML SRDEQEVKMD QKFLYGKEPI ESYHHHHNHQ HYGCGNVSDT 300 NSEISASESV ANNMTNVKIY GHQNEEEQDI KTIPFIDFLG VGAT

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MNFLVPCVEQ SPWSFNHEEN LQKLKDEIEE ENLVDMKNNN NGGTKTTKLC VRGHWRPHED  60
SKLRELVAQY GPQNWNLIAE KLDGRSGKSC RLRWFNQLDP RINRMAFSEE EEERLLTAHK  120
MYGNKWSMIA RLFPGRTDNA VKNHWHVIMA RKHREQNSVY RRRKSTSSNL QQIIAPNNNN  180
NDSIIQIKSN NMQSDLTISS NNCNNNNIIV DDHQSASTCT DLSLTPSSSK PMFPPFLITR  240
FTHHHHVEHQ GFLDSNKGML SRDEQEVKMD QKFLYGKEPI ESYHHHHNHQ HYGCGNVSDT  300
NSEISASESV ANNMTNVKIY GHQNEEEQDI KTIPFIDFLG VGAT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69560.1	6e-72	MYB family protein