PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT27794.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 240aa    MW: 26176.1 Da    PI: 9.5064
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT27794.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.36.4e-214786443
                -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
      SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                +n+sn qvtfskRr+ ++KKA+EL++LC+ae+a+++fs+ 
  PHT27794.1 47 KNESNMQVTFSKRRASLFKKASELCTLCGAEIAIVVFSPG 86
                89***********************************974 PP
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    
MGISNIKALG VGIKNHNFLV SQILSSVNLA MPRMSKGRKK VEIVEMKNES NMQVTFSKRR  60
ASLFKKASEL CTLCGAEIAI VVFSPGKANK IYSFGHPSVE LLVDTFLGRD LLPPNDDDRH  120
NHLIRAHRNT GQRGLNKEVM DMQESLQKEK AVGKSLLESG RGAYDRVCES PIVEGLSLSQ  180
LEQLKEALEA KKQKVEFEAK LQQMGSAPLP FLTFGSALSP TSGDGESSSH GPNVGAPFPN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-44M-type_MADS family protein