PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT27795.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 211aa    MW: 23049.3 Da    PI: 8.8541
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT27795.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.71.1e-211663348
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T..TSEEEE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss..tgklye 48
                 +n+sn qvtfskRr g++KKA+EL++LC+ae+a+++fs+   +k+y 
  PHT27795.1 16 MKNESNMQVTFSKRRVGLFKKASELCTLCGAEIAIVVFSPgkANKVYS 63
                58************************************9722456665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    
MARLSKGRKK VEIVKMKNES NMQVTFSKRR VGLFKKASEL CTLCGAEIAI VVFSPGKANK  60
VYSFGHPSVE LLVDTFLGRD LPPPNDDDRH NHLIRAHRNT GQRGLNKEVM DMQESLQKEK  120
AVGKSLLESG RGAYDRVCES PIIEGLSLSQ LEQLKEALEA QKQKVQFEAE LQQMGSDAPL  180
PFLTFGSALS PTSGDGASSS HGPNVGAPFP N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-44M-type_MADS family protein