PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT27796.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 229aa    MW: 25761.2 Da    PI: 10.1714
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT27796.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.53e-221763448
                -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T..TSEEEE CS
      SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifss..tgklye 48
                +n+sn qvtfskRr+g++KKA+EL++LC+ae+a+++fs+   +k+y 
  PHT27796.1 17 KNDSNMQVTFSKRRAGLFKKASELCTLCGAEIAIVVFSPgkANKVYS 63
                8************************************9722456665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MPRMSKGRKK VEIVEMKNDS NMQVTFSKRR AGLFKKASEL CTLCGAEIAI VVFSPGKANK  60
VYSFGHPSVE LLVDTFLGRD LPPPNDDDFH NHLIRAHQNT GQRGLNKEVM DMQESLQKEK  120
AVVTSFIFIV ASITWKRRKG ANSVSGFFAV ACSLPFDYVK TQIQKMQPDV EGKLPYLGSF  180
DCAMKTLKAG GPFKFYTGFP VYCVRIAPHV MMTWIFLNQI QKAEKKIGL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.17e-37M-type_MADS family protein