PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT27934.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 243aa MW: 26358.2 Da PI: 8.5849

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT27934.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	131.5	3.4e-41	62	161	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+kll ++p +r da++slvyeA++r+rdPvyG++g i++lqqq+++l+ael+++++ PHT27934.1 62 PCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKLLMEVPVGQRADAANSLVYEANVRLRDPVYGCMGAISALQQQIQNLQAELNSIRA 160 7**********************************************************************************************9987 PP DUF260 100 e 100 e PHT27934.1 161 E 161 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence
MCLFAFVVVM MNRERMDEMG KKLKTEIIDA SNSQLNMQQL QMGRRHVLGP VAGGTTLNHV 60 TPCAACKLLR RRCAEECPFS PYFSPHEPHK FAAVHKVFGA SNVSKLLMEV PVGQRADAAN 120 SLVYEANVRL RDPVYGCMGA ISALQQQIQN LQAELNSIRA EILRYKYREA ANSLIIASIS 180 TSVAPELPQA PPTPPPPPPP SMVVVSSSSS STSSASSNLY TPASSSVANF SAITNNSIAY 240 FDQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	1e-73	LBD family protein