PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT27972.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 259aa    MW: 29448.4 Da    PI: 9.4622
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT27972.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.53e-121559145
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                k ie+k  r++ fskR+ng+ KKA+E S L++ +v  i+f + g 
  PHT27972.1 15 KLIESKEARTIAFSKRKNGLGKKAKEYSNLTGEDVNFILFTQAGI 59
                569*************************************99886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    
MDKRGGKGRQ KIEMKLIESK EARTIAFSKR KNGLGKKAKE YSNLTGEDVN FILFTQAGIP  60
HSYDSPSIEK VIDKFNELKQ NDSLQNHTVM SKTNVLEAFE DLRKEVQAFK EKYLDSKISI  120
DKHTLENRRV FRPLWFGMLV TARALVRVVT DNIVPKRTET KSSPSKGTSE ATRLHPLLYE  180
LALQALSQSG AEYDEHSEKE CFKSDDTDAN SPSTEQLVKA FSIDRYPIRM QCDGTADLTG  240
DFVVKTIKTV HQRTDSRII
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-15M-type_MADS family protein