PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT27973.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

M-type_MADS

Protein Properties

Length: 169aa MW: 19192.8 Da PI: 9.2973

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT27973.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	40.8	2.9e-13	15	63	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k ie+k r++ fskR+ng+ KKA+E S L++ +v i+f + gk + y PHT27973.1 15 KLIESKEARTIAFSKRKNGLGKKAKEYSNLTGEDVGFILFTQAGKPHSY 63 569*****************************************98887 PP

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence
MDKRGGKGRQ KIEMKLIESK EARTIAFSKR KNGLGKKAKE YSNLTGEDVG FILFTQAGKP 60 HSYGSPSIEK VIDKFHELKQ NDSLQNHTGM SKTNVFEAFE DLGKEVQAFK EKALDSEMPT 120 DKHMLENRLK QFEAYKSRLD KIKKEIKGDV PAEQFGISEV AFDLEEMSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34440.1	2e-18	M-type_MADS family protein