PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT28035.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 237aa    MW: 26737.9 Da    PI: 10.5832
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT28035.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.31.8e-221663348
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT..SEEEE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst..gklye 48
                 en+sn qvtfskRr+g++KKA+EL++LC+ae+a+++fs++  +k+y 
  PHT28035.1 16 MENESNLQVTFSKRRAGLFKKASELCTLCGAEIAIVVFSPSkaNKVYS 63
                69************************************9862245555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    
MPRRRKGRKR VDIVKMENES NLQVTFSKRR AGLFKKASEL CTLCGAEIAI VVFSPSKANK  60
VYSFGHPSVE LLVDRFLGRD LPPPNNEGRH NHLLMNHRNV VLREVNKEVM NMEEILQMEK  120
ARGESILEIR RRANGGWWEA PINALNLTEL KQLLEAMEFL KQDVEKEAQQ QQMVTNVGLP  180
FLTFGSALSP TNGARAISSS HGHFLKIKGD FRTRLGACPG AKSWQNVSGH RSEALVL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
126PRRRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-48M-type_MADS family protein