PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT28077.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Protein Properties

Length: 253aa MW: 28856.3 Da PI: 9.1228

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT28077.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	53	6.2e-17	37	114	16	99
EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 l +pkkfa++ ++ + ++l+ +sg W+v+l + +++ +l++GWkeFv a+ L+e D ++Fk++g+s+f v+vf++ PHT28077.1 37 LAIPKKFANNLR--EKLGDFVSLTGPSGANWNVRL--TLIGDALFLKDGWKEFVGAHSLEEDDLLIFKYNGSSRF--DVSVFDR 114 78****5444..457779***********..889999************************998999..9999997 PP

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence
MGISGHYREV MMMCREDSVS GKGMEEEPHF WILLGPLAIP KKFANNLREK LGDFVSLTGP 60 SGANWNVRLT LIGDALFLKD GWKEFVGAHS LEEDDLLIFK YNGSSRFDVS VFDRQSLCEK 120 EASCFVKKCE HADVASRSRT KRHTPREYSS RDVSEAPPTK KPKLAATTTS EDTSKSSSHD 180 EYGPQRKRKH LHRLQHLRTL MNLLHIMSVS PQQKRKLRLL RLQHLEHGVL ELMPSCCPRG 240 IKCLCHLVFS IVE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	142	RSRTKR
2	186	216	RKRKHLHRLQHLRTLMNLLHIMSVSPQQKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	2e-25	B3 family protein