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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PHT28113.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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| Family | MYB | ||||||||
| Protein Properties | Length: 323aa MW: 37372.4 Da PI: 6.9482 | ||||||||
| Description | MYB family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 56.1 | 8.6e-18 | 44 | 91 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+WT eEd l++ ++ +G g+W++ ar+ g++Rt+k+c++rw++yl
PHT28113.1 44 RGPWTVEEDFTLINFIAHHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 91
89********************************************97 PP
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| 2 | Myb_DNA-binding | 51.3 | 2.7e-16 | 97 | 140 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
PHT28113.1 97 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 140
7999******************.*********.***********96 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 323 aa Download sequence |
MDHHQKIEVD SGRRGGRGGG GREVDYTKNN QEIREEDIVM DLRRGPWTVE EDFTLINFIA 60 HHGEGRWNSL ARCAGLKRTG KSCRLRWLNY LRPDVRRGNI TLEEQLLILE LHSRWGNRWS 120 KIAQHLPGRT DNEIKNYWRT RVQKHAKQLK CDVNSKQFKD TMKYLWMPRL AERIQAAAAA 180 SNPATASSSG PPTTTYIQNQ EIQHPLPNMN HHMSDYTPIP FIEKTNSLNY SATSASSDNY 240 SSDLTDGCYN FPINQSNNPD YSQVNQSTNQ MCYGESTINP TSYDFHHGFQ GFQEVDQQNN 300 TQWMDNPWNI EDVCFLQQLN NDM |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 14 | 22 | RGGRGGGGR |
| 2 | 15 | 21 | GGRGGGG |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G49620.1 | 1e-84 | MYB family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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