PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT28241.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

TALE

Protein Properties

Length: 316aa MW: 35625.7 Da PI: 4.9446

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT28241.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.6	1.2e-09	250	283	22	55
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 +yp++ee+ +L++ +gL+++q+ +WF N+R ++ PHT28241.1 250 WPYPTEEEKNRLSEMTGLDQKQINNWFINQRKRH 283 58*****************************885 PP
2	ELK	38.8	2e-13	203	224	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++L+rKYsgyL+sL++EF+ PHT28241.1 203 ELKEMLMRKYSGYLSSLRKEFL 224 9********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence
MMDELSKLHS AIACSRTSTG QQQEGPPIDH NTNSLVAHHH HHNNNNIGSS LEGMSDLIKA 60 QIANHPLYPN LLCAYLQCRK VGAPQELASI FEEISNENNL ISSCHTTEIG TDPELDHFME 120 SYCAVLVKYK EELLKPFDEA TTFLNNIESQ LSSLCKDSLI TSTSFNNDLS DEAGGTSDDD 180 LGCEEMEAAD GQESPASREG DNELKEMLMR KYSGYLSSLR KEFLKKRKKG KLPKDARIAL 240 MDWWNTHNRW PYPTEEEKNR LSEMTGLDQK QINNWFINQR KRHWRPSEDM KFALMEGVSA 300 GSMYFDGPGG TGSIDT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	219	228	LRKEFLKKRK
2	225	229	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G70510.1	2e-79	TALE family protein